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  1. Instrumentation & Facilities
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  3. Flow Cytometry Bioinformatics
Instrumentation & Facilities Overview
  • Cytek Aurora
  • 10x Genomics Chromium
  • Beckman Coulter Optima XPN-90K: BMSB J517
  • BD Accuri C6
  • BD LSRFortessa SORP
  • BD LSRII
  • BD FACSAriaIII
  • Bio-Rad S3e Cell Sorter
  • Hot Room
  • Luminex MAGPIX®
  • Molecular Devices SpectraMax® M5
  • nanoString nCounter
  • Seahorse XF24 & XF96
  • VI-CELL XR Cell Viability Analyzer
  • Zeiss LSM 710 3-Channel Confocal Microscope
  • Zeiss LSM 510 Meta Confocal Microscope: ARB R4-186
  • Tips and Tricks

Flow Cytometry Bioinformatics

Resources for Flow Cytometry Bioinformatics

Community portals

ISAC

FlowCAP

Data Standards

FCS 3.1

Gating-ML

MIFlowCyt

Parsers, Core Data Access

CFCS library

flowCore

Python FCM

Unsupervised Clustering/Visualization

VISNE

FLOCK

SPADE

CytoSPADE

Wanderlust

Semi/Supervised Analysis/Visualization

FLAME

x-Cyt

Citrus

Other R Packages

An ever-growing list, to get started, go to this page and scroll down to the “flow cytometry” section.

Integrated Applications

FlowJo

CytoBank

FCS Express

Utilities

BD flow tool index

GenePattern Flow Cytometry Suite

Data Repositories

Flow Repository

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Center for Immunology & Transplantation University of Florida

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